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Zitate-Liste zu PMC 5927659 (freier Volltext); Shrutii Sarda and Sridhar Hannenhalli (2017) Orphan CpG islands as alternative promoters

doi:10.1080/21541264.2017.1373209, PMID 29099304, PMC 5927659 (freier Volltext)


<ref name="PMID29099304">S. Sarda, S. Hannenhalli: ''Orphan CpG islands as alternative promoters.'' In: ''Transcription.'' Band 9, Nummer 3, 2018, S. 171–176, {{DOI|10.1080/21541264.2017.1373209}}, PMID 29099304, {{PMC|5927659}}.</ref>

Die Spalte No enthält die ursprünglichen Referenznummern.


Kurze Zitierweise No [ref] IDs mit Link Quellcode für Zitate
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Gardiner-Garden & Frommer (1987) 2. [2] PMID 3656447 <ref name="PMID3656447">{{Literatur |Autor=M. Gardiner-Garden, M. Frommer |Titel=CpG islands in vertebrate genomes |Sammelwerk=Journal of Molecular Biology |Band=196 |Nummer=2 |Verlag= |Datum=1987 |Seiten=261–282 |ISSN=0022-2836 |PMID=3656447}}</ref>
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Antequera & Bird (1993) 6. [6] doi:10.1073/pnas.90.24.11995 <ref name="DOI:10.1073/pnas.90.24.11995">{{Literatur |Autor=A. Bird, F. Antequera |Titel=Number of CpG islands and genes in human and mouse |Sammelwerk=Proceedings of the National Academy of Sciences |Band=90 |Nummer=24 |Verlag= |Datum=1993 |Seiten=11995–11999 |ISSN=1091-6490 |Online=[https://www.pnas.org/content/90/24/11995 pnas.org] |DOI=10.1073/pnas.90.24.11995 |PMID=7505451}}</ref>
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Becker et al. (1987) 13. [13] PMID 2889531 <ref name="PMID2889531">{{Literatur |Autor=P. B. Becker, S. Ruppert, G. Schütz |Titel=Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors |Sammelwerk=Cell |Band=51 |Nummer=3 |Verlag= |Datum=1987 |Seiten=435–443 |ISSN=0092-8674 |PMID=2889531}}</ref>
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Jones (2012) 15. [15] PMID 2264101 <ref name="PMID2264101">{{Literatur |Autor=D. Hurlbut, R. Zhong, P. Wang, H. Chen, J. Duff, D. Grant |Titel=Intestinal permeability and bacterial translocation following orthotopic intestinal transplantation in the rat |Sammelwerk=Transplantation Proceedings |Band=22 |Nummer=6 |Verlag= |Datum=1990 |Seiten=2451 |ISSN=0041-1345 |PMID=2264101}}</ref>
Razin & Riggs (1980) 16. [16] PMID 6254144 <ref name="PMID6254144">{{Literatur |Autor=A. Razin, A. D. Riggs |Titel=DNA methylation and gene function |Sammelwerk=Science (New York, N.Y.) |Band=210 |Nummer=4470 |Verlag= |Datum=1980 |Seiten=604–610 |ISSN=0036-8075 |PMID=6254144}}</ref>
Illingworth & Bird (2009) 17. [17] PMID 19376112 <ref name="PMID19376112">{{Literatur |Autor=Robert S. Illingworth, Adrian P. Bird |Titel=CpG islands--'a rough guide' |Sammelwerk=FEBS letters |Band=583 |Nummer=11 |Verlag= |Datum=2009 |Seiten=1713–1720 |ISSN=1873-3468 |DOI=10.1016/j.febslet.2009.04.012 |PMID=19376112}}</ref>
Rose & Klose (2014) 18. [18] doi:10.1016/j.bbagrm.2014.02.007 <ref name="doi:10.1016/j.bbagrm.2014.02.007">{{Literatur |Autor=Nathan R. Rose, Robert J. Klose |Titel=Understanding the relationship between DNA methylation and histone lysine methylation |Sammelwerk=Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms |Band=1839 |Nummer=12 |Verlag= |Datum=2014 |Seiten=1362–1372 |ISSN=1874-9399 |Online=[https://www.sciencedirect.com/science/article/pii/S1874939914000285 sciencedirect.com] |DOI=10.1016/j.bbagrm.2014.02.007 |PMID=24560929}}</ref>
Sharif et al. (2010) 19. [19] doi:10.1111/j.1440-169X.2010.01193.x <ref name="doi:10.1111/j.1440-169X.2010.01193.x">{{Literatur |Autor=Jafar Sharif, Takaho A. Endo, Tetsuro Toyoda, Haruhiko Koseki |Titel=Divergence of CpG island promoters: A consequence or cause of evolution? |Sammelwerk=Development, Growth & Differentiation |Band=52 |Nummer=6 |Verlag= |Datum=2010 |Seiten=545–554 |ISSN=1440-169X |Online=[https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1440-169X.2010.01193.x wiley.com] |DOI=10.1111/j.1440-169X.2010.01193.x}}</ref>
Antequera (2003) 20. [20] PMID 14504655 <ref name="PMID14504655">{{Literatur |Autor=F. Antequera |Titel=Structure, function and evolution of CpG island promoters |Sammelwerk=Cellular and molecular life sciences: CMLS |Band=60 |Nummer=8 |Verlag= |Datum=2003 |Seiten=1647–1658 |ISSN=1420-682X |DOI=10.1007/s00018-003-3088-6 |PMID=14504655}}</ref>
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Einzelnachweise

  1. ↑ A. Bird, M. Taggart, M. Frommer, O. J. Miller, D. Macleod: A fraction of the mouse genome that is derived from islands of nonmethylated, CpG-rich DNA. In: Cell. Band 40, Nr. 1, 1985, ISSN 0092-8674, S. 91–99, PMID 2981636.
  2. ↑ M. Gardiner-Garden, M. Frommer: CpG islands in vertebrate genomes. In: Journal of Molecular Biology. Band 196, Nr. 2, 1987, ISSN 0022-2836, S. 261–282, PMID 3656447.
  3. ↑ F. Antequera, A. Bird: CpG islands as genomic footprints of promoters that are associated with replication origins. In: Current biology: CB. Band 9, Nr. 17, 1999, ISSN 0960-9822, S. R661–667, PMID 10508580.
  4. ↑ A. Wutz, O. W. Smrzka, N. Schweifer, K. Schellander, E. F. Wagner, D. P. Barlow: Imprinted expression of the Igf2r gene depends on an intronic CpG island. In: Nature. Band 389, Nr. 6652, 1997, ISSN 0028-0836, S. 745–749, doi:10.1038/39631, PMID 9338788.
  5. ↑ C. S. Hoffman, F. Winston: Isolation and characterization of mutants constitutive for expression of the fbp1 gene of Schizosaccharomyces pombe. In: Genetics. Band 124, Nr. 4, 1990, ISSN 0016-6731, S. 807–816, PMID 2157626, PMC 1203973 (freier Volltext).
  6. ↑ A. Bird, F. Antequera: Number of CpG islands and genes in human and mouse. In: Proceedings of the National Academy of Sciences. Band 90, Nr. 24, 1993, ISSN 1091-6490, S. 11995–11999, doi:10.1073/pnas.90.24.11995, PMID 7505451 (pnas.org).
  7. ↑ Robert S. Illingworth, Ulrike Gruenewald-Schneider, Shaun Webb, Alastair R. W. Kerr, Keith D. James, Daniel J. Turner, Colin Smith, David J. Harrison, Robert Andrews, Adrian P. Bird: Orphan CpG islands identify numerous conserved promoters in the mammalian genome. In: PLoS genetics. Band 6, Nr. 9, 2010, ISSN 1553-7404, S. e1001134, doi:10.1371/journal.pgen.1001134, PMID 20885785, PMC 2944787 (freier Volltext).
  8. ↑ S. Hannenhalli, S. Levy: Promoter prediction in the human genome. In: Bioinformatics (Oxford, England). 17 Suppl 1, 2001, ISSN 1367-4803, S. S90–96, PMID 11472997.
  9. ↑ F. Larsen, G. Gundersen, R. Lopez, H. Prydz: CpG islands as gene markers in the human genome. In: Genomics. Band 13, Nr. 4, 1992, ISSN 0888-7543, S. 1095–1107, PMID 1505946.
  10. ↑ V. T. Schall, M. C. Vasconcellos, G. U. Valent, M. I. Sato, E. V. Furlan, P. S. Sanchez: Evaluation of the genotoxic activity and acute toxicity of Euphorbia splendens latex, a molluscicide for the control of schistosomiasis. In: Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Medicas E Biologicas. Band 24, Nr. 6, 1991, ISSN 0100-879X, S. 573–582, PMID 1823273.
  11. ↑ Scott B. Rothbart, Brian D. Strahl: Interpreting the language of histone and DNA modifications. In: Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. Band 1839, Nr. 8, 2014, ISSN 1874-9399, S. 627–643, doi:10.1016/j.bbagrm.2014.03.001, PMID 24631868 (sciencedirect.com).
  12. ↑ Amy S. Weinmann, Pearlly S. Yan, Matthew J. Oberley, Tim Hui-Ming Huang, Peggy J. Farnham: Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. In: Genes & Development. Band 16, Nr. 2, 2002, ISSN 0890-9369, S. 235–244, doi:10.1101/gad.943102, PMID 11799066.
  13. ↑ P. B. Becker, S. Ruppert, G. Schütz: Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors. In: Cell. Band 51, Nr. 3, 1987, ISSN 0092-8674, S. 435–443, PMID 2889531.
  14. ↑ Xudong Wu, Jens Vilstrup Johansen, Kristian Helin: Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation. In: Molecular Cell. Band 49, Nr. 6, 2013, ISSN 1097-4164, S. 1134–1146, doi:10.1016/j.molcel.2013.01.016, PMID 23395003.
  15. ↑ D. Hurlbut, R. Zhong, P. Wang, H. Chen, J. Duff, D. Grant: Intestinal permeability and bacterial translocation following orthotopic intestinal transplantation in the rat. In: Transplantation Proceedings. Band 22, Nr. 6, 1990, ISSN 0041-1345, S. 2451, PMID 2264101.
  16. ↑ A. Razin, A. D. Riggs: DNA methylation and gene function. In: Science (New York, N.Y.). Band 210, Nr. 4470, 1980, ISSN 0036-8075, S. 604–610, PMID 6254144.
  17. ↑ Robert S. Illingworth, Adrian P. Bird: CpG islands--'a rough guide'. In: FEBS letters. Band 583, Nr. 11, 2009, ISSN 1873-3468, S. 1713–1720, doi:10.1016/j.febslet.2009.04.012, PMID 19376112.
  18. ↑ Nathan R. Rose, Robert J. Klose: Understanding the relationship between DNA methylation and histone lysine methylation. In: Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. Band 1839, Nr. 12, 2014, ISSN 1874-9399, S. 1362–1372, doi:10.1016/j.bbagrm.2014.02.007, PMID 24560929 (sciencedirect.com).
  19. ↑ Jafar Sharif, Takaho A. Endo, Tetsuro Toyoda, Haruhiko Koseki: Divergence of CpG island promoters: A consequence or cause of evolution? In: Development, Growth & Differentiation. Band 52, Nr. 6, 2010, ISSN 1440-169X, S. 545–554, doi:10.1111/j.1440-169X.2010.01193.x (wiley.com).
  20. ↑ F. Antequera: Structure, function and evolution of CpG island promoters. In: Cellular and molecular life sciences: CMLS. Band 60, Nr. 8, 2003, ISSN 1420-682X, S. 1647–1658, doi:10.1007/s00018-003-3088-6, PMID 14504655.
  21. ↑ John P. Thomson, Peter J. Skene, Jim Selfridge, Thomas Clouaire, Jacky Guy, Shaun Webb, Alastair R. W. Kerr, Aimée Deaton, Rob Andrews, Keith D. James, Daniel J. Turner, Robert Illingworth, Adrian Bird: CpG islands influence chromatin structure via the CpG-binding protein Cfp1. In: Nature. Band 464, Nr. 7291, 2010, ISSN 1476-4687, S. 1082–1086, doi:10.1038/nature08924, PMID 20393567, PMC 3730110 (freier Volltext).
  22. ↑ M. S. Casey: Unionism-professionalism: a false dichotomy. In: The Queensland Nurse. Band 10, Nr. 5, 1991, ISSN 0815-936X, S. 20–21, PMID 1763205.
  23. ↑ Francesco Nicola Carelli, Takashi Hayakawa, Yasuhiro Go, Hiroo Imai, Maria Warnefors, Henrik Kaessmann: The life history of retrocopies illuminates the evolution of new mammalian genes. In: Genome Research. Band 26, Nr. 3, 2016, ISSN 1549-5469, S. 301–314, doi:10.1101/gr.198473.115, PMID 26728716, PMC 4772013 (freier Volltext).
  24. ↑ Aimée M. Deaton, Shaun Webb, Alastair R. W. Kerr, Robert S. Illingworth, Jacky Guy, Robert Andrews, Adrian Bird: Cell type-specific DNA methylation at intragenic CpG islands in the immune system. In: Genome Research. Band 21, Nr. 7, 2011, ISSN 1549-5469, S. 1074–1086, doi:10.1101/gr.118703.110, PMID 21628449, PMC 3129250 (freier Volltext).
  25. ↑ Debora Mancini-DiNardo, Scott J. S. Steele, Robert S. Ingram, Shirley M. Tilghman: A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer. In: Human Molecular Genetics. Band 12, Nr. 3, 2003, ISSN 0964-6906, S. 283–294, PMID 12554682.
  26. ↑ S. K. Acharya, S. Vashisht, R. K. Tandon: Primary sclerosing cholangitis in India. In: Gastroenterologia Japonica. Band 24, Nr. 1, 1989, ISSN 0435-1339, S. 75–79, PMID 2651206.
  27. ↑ Erling A. Hoivik, Solveig L. Witsoe, Inger R. Bergheim, Yunjian Xu, Ida Jakobsson, Anders Tengholm, Stein Ove Doskeland, Marit Bakke: DNA methylation of alternative promoters directs tissue specific expression of Epac2 isoforms. In: PloS One. Band 8, Nr. 7, 2013, ISSN 1932-6203, S. e67925, doi:10.1371/journal.pone.0067925, PMID 23861833, PMC 3701594 (freier Volltext).
  28. ↑ Jean-Pierre J. Issa, Robert A. Waterland, Xinli Chen, Jingmin Shu, Saira Ahmed, Li Zhang, Jiexin Zhang, Yi Guo, Yutaka Kondo, Lanlan Shen: Genome-Wide Profiling of DNA Methylation Reveals a Class of Normally Methylated CpG Island Promoters. In: PLOS Genetics. Band 3, Nr. 10, 2007, ISSN 1553-7404, S. e181, doi:10.1371/journal.pgen.0030181, PMID 17967063 (plos.org).
  29. ↑ Michael Weber, Ines Hellmann, Michael B. Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler: Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. In: Nature Genetics. Band 39, Nr. 4, 2007, ISSN 1061-4036, S. 457–466, doi:10.1038/ng1990, PMID 17334365.
  30. ↑ Philippe Tropel, Laura Jung, Cécile André, Adeline Ndandougou, Stéphane Viville: CpG Island Methylation Correlates with the Use of Alternative Promoters for USP44 Gene Expression in Human Pluripotent Stem Cells and Testes. In: Stem Cells and Development. Band 26, Nr. 15, 1. August 2017, ISSN 1557-8534, S. 1100–1110, doi:10.1089/scd.2017.0057, PMID 28520534.
  31. ↑ J. Pernow, J. M. Lundberg, L. Kaijser: Phentolamine- and clonidine-induced changes in plasma neuropeptide Y-like immunoreactivity during sympathetic activation in man. In: Clinical Physiology (Oxford, England). Band 7, Nr. 5, 1987, ISSN 0144-5979, S. 431–434, PMID 2822340.
  32. ↑ Melanie Ehrlich: DNA hypomethylation in cancer cells. In: Epigenomics. Band 1, Nr. 2, 2009, ISSN 1750-192X, S. 239–259, doi:10.2217/epi.09.33, PMID 20495664, PMC 2873040 (freier Volltext).
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